The MyKids study is a biological study towards the molecular profiling of pediatric NRSTS, the development of NRSTS tumoroid cultures, the establishment of liquid biopsy biomarkers and the molecular profiling of post-treatment tissue samples. The…
ID
Source
Brief title
Condition
- Soft tissue neoplasms malignant and unspecified
Synonym
Research involving
Sponsors and support
Intervention
Outcome measures
Primary outcome
WP2:
- Determine molecular diagnosis on FFPE with mRNAseq.
- Comparative Genome Hybridization (aCGH) for determination of genomic index
(GI).
- Fédération Nationale des Centers de Lutte Contre le Cancer (FNCLCC) grading.
- CINSARC signature: complexity Index in Sarcoma; an expression profile
signature to predict tumor aggressiveness and metastatic outcome in
non-translocation-associated sarcomas, based on a 67-gene signature related to
chromosome integrity and genome complexity.
Secondary outcome
WP1:
-Bulk mRNA sequencing (mRNAseq), Whole Exome Sequencing (WES), and DNA
methylation profiling (DNAmeth) in tumor sample and blood for germline testing.
-Comparison of diagnoses established with conventional histology/pathology with
diagnoses established with molecular techniques from WP1.
-Identification of actionable targets.
WP2:
- Development of an international, multi-disciplinary Diagnostic Review Board.
- Comparison of diagnoses established with conventional histology/pathology
with diagnoses established with molecular techniques from WP2
WP3:
- Percentage of successful tumoroid models cultured.
- Single cell mRNA sequencing of tumoroids
- Culture protocol development for different NRSTS tumoroid models
- Drug screen on tumoroid models
WP4
- Development of patient specific markers based on WP1 findings.
- Measure markers in ctDNA during and after treatment.
- Detection of copy number variations (CNVs).
WP1-4:
Collection of patient-, treatment- and outcome data for correlation to
prognosticators from the different work packages
WP5:
RNAseq, WES and DNAmeth on tissue material obtained post-treatment
Background summary
Pediatric NRSTS are a relatively rare (incidence is 4-6/100.000, 2-4% of all
pediatric tumors) and heterogeneous group of soft tissue sarcomas. It includes
many histologic types and subtypes with a significant degree of overlap in
morphology and immunoprofile. Diagnosis is traditionally based on histology,
immunohistochemistry, and genetic alterations. One of the main problems is
inconclusive diagnosis, resulting in *undifferentiated* or *unclassified*
sarcoma. In addition, there is a considerable lack of knowledge of the tumor
driver events in (pediatric) sarcoma. The previous EpSSG-NRSTS-2005 study
evaluated the role of standard treatment (including chemotherapy) in pediatric
NRSTS in Europe. This revealed that the prognosis in children is generally
similar or more favorable than in adults. Unfavorable groups included
*unclassified sarcomas* to a high degree.
Molecular alterations, especially chromosomal translocations are common in STS
and result in highly specific chimeric genes characteristic for a certain
histiotype. Detection of specific recurring genetic alterations has reduced the
number of *undifferentiated/unclassified* diagnoses, albeit that entities still
remain unclassified. In addition, an estimated 10% of histological diagnoses
are altered after molecular analysis of tumor material that elucidates a
diagnostic translocation. In addition, novel transcripts are being detected and
increase the knowledge and diagnostic potential in STS. Lastly, in an
increasing number of STS, detected genetic alterations determine treatment
options.
The MYKIDS study is designed to better understand the potential for molecular
diagnosis of pediatric NRSTS with a view to optimize treatment. In particular,
to a) understand the value of molecular profiling in pediatric NRSTS, b) enable
a comprehensive decision on the treatment options for individual patients, c)
compare molecular profiles to histological grading for prognostication, d)
build tumor models to identify and test new treatments, e) identify cell free
tumor DNA and circulating tumor cells and assessing responses to treatment in a
non-invasive manner (liquid biopsies), and f) to collect post-treatment tissue
to characterize molecular progression markers.
Study objective
The MyKids study is a biological study towards the molecular profiling of
pediatric NRSTS, the development of NRSTS tumoroid cultures, the establishment
of liquid biopsy biomarkers and the molecular profiling of post-treatment
tissue samples. The overall aim is to better understand the potential for
molecular diagnosis of pediatric NRSTS with a view to optimize treatment.
Study design
International, multicenter, prospective study
This study is a NRSTS biological study for molecular profiling, embedded in the
multi-national framework of the EpSSG to allow the collection of samples from
all over Europe and countries outside the EU of localized and disseminated
NRSTS. This study is divided into five work packages (WPs). Participation in
the entire study requires at least participation in WP2
Study burden and risks
The risks of study participation are negligible, as biopsy and molecular
profiling of tumor material will be performed as part of standard of care. For
interpretation of sequencing results, comparison with germline sequencing is
needed, for which an extra tube of blood is needed, to be collected in
combination with regular blood withdrawals. This is also a standard of care
procedure.
The only additional material collected for study purposes are the blood samples
for the detection of circulating tumor DNA (liquid biopsies). These blood
withdrawals will be combined with standard of care blood withdrawals as much as
possible. Treatment interventions are not part of this study protocol, but data
will be captured as part of the registry.
Heidelberglaan 25
Utrecht 3584 CS
NL
Heidelberglaan 25
Utrecht 3584 CS
NL
Listed location countries
Age
Inclusion criteria
-Patients within 2 months after new diagnosis of NRSTS
-Age 0-25 years
-Written informed consent by patients and/or patients/legal representatives and
patients according to local law and legislation
-Minimal requirements for study participation: diagnostic FFPE material and
peripheral blood for germline analysis for WP2
Exclusion criteria
-Relapsed NRSTS, not included at diagnosis
Design
Recruitment
Followed up by the following (possibly more current) registration
No registrations found.
Other (possibly less up-to-date) registrations in this register
No registrations found.
In other registers
Register | ID |
---|---|
ISRCTN | ISRCTN12831761 |
CCMO | NL81255.041.22 |